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25 lines
919 B
C++
25 lines
919 B
C++
// $Id: fromCountTableComponentToDistance.cpp 9582 2011-06-21 11:31:21Z cohenofi $
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#include "fromCountTableComponentToDistance.h"
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#include "likeDist.h"
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#include <cassert>
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fromCountTableComponentToDistance::fromCountTableComponentToDistance(
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const countTableComponentGam& ctc,
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const stochasticProcess &sp,
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const MDOUBLE toll,
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const MDOUBLE brLenIntialGuess,
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unObservableData* unObservableData_p) : _sp(sp), _ctc(ctc),_unObservableData_p(unObservableData_p) {
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_distance = brLenIntialGuess ;//0.03;
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_toll = toll;
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}
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void fromCountTableComponentToDistance::computeDistance() {
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MDOUBLE maxPairwiseDistance = 10.0; // The default is 5.0
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MDOUBLE minPairwiseDistance = 0.0000001; // The default
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likeDist likeDist1(_sp,_toll,maxPairwiseDistance,minPairwiseDistance,_unObservableData_p);
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MDOUBLE initGuess = _distance;
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_distance = likeDist1.giveDistance(_ctc,_likeDistance,initGuess);
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assert(_distance>=0);
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}
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