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42 lines
2.3 KiB
Plaintext
42 lines
2.3 KiB
Plaintext
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23.18
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26.95 13.24
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17.67 1.90 794.38
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59.93 103.33 58.94 1.90
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1.90 220.99 173.56 55.28 75.24
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9.77 1.90 63.05 583.55 1.90 313.56
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120.71 23.03 53.30 56.77 30.71 6.75 28.28
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13.90 165.23 496.13 113.99 141.49 582.40 49.12 1.90
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96.49 1.90 27.10 4.34 62.73 8.34 3.31 5.98 12.26
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25.46 15.58 15.16 1.90 25.65 39.70 1.90 2.41 11.49 329.09
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8.36 141.40 608.70 2.31 1.90 465.58 313.86 22.73 127.67 19.57 14.88
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141.88 1.90 65.41 1.90 6.18 47.37 1.90 1.90 11.97 517.98 537.53 91.37
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6.37 4.69 15.20 4.98 70.80 19.11 2.67 1.90 48.16 84.67 216.06 6.44 90.82
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54.31 23.64 73.31 13.43 31.26 137.29 12.83 1.90 60.97 20.63 40.10 50.10 18.84 17.31
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387.86 6.04 494.39 69.02 277.05 54.11 54.71 125.93 77.46 47.70 73.61 105.79 111.16 64.29 169.90
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480.72 2.08 238.46 28.01 179.97 94.93 14.82 11.17 44.78 368.43 126.40 136.33 528.17 33.85 128.22 597.21
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1.90 21.95 10.68 19.86 33.60 1.90 1.90 10.92 7.08 1.90 32.44 24.00 21.71 7.84 4.21 38.58 9.99
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6.48 1.90 191.36 21.21 254.77 38.82 13.12 3.21 670.14 25.01 44.15 51.17 39.96 465.58 16.21 64.92 38.73 26.25
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195.06 7.64 1.90 1.90 1.90 19.00 21.14 2.53 1.90 1222.94 91.67 1.90 387.54 6.35 8.23 1.90 204.54 5.37 1.90
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0.072 0.019 0.039 0.019 0.006 0.025 0.024 0.056 0.028 0.088 0.169
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0.023 0.054 0.061 0.054 0.072 0.086 0.029 0.033 0.043
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Ala Arg Asn Asp Cys Gln Glu Gly His Ile Leu Lys Met Phe Pro Ser Thr Trp Tyr Val
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S_ij = S_ji and PI_i for the mtREV24 model (Adachi and Hasegawa 1996).
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The PI's used to sum to 0.999 and I changed one of the freq from 0.168
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into 0.169 so that the sum is 1. Prepared by Z. Yang according to
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data sent by Dr M. Hasegawa. This matrix was obtained from the 12
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mitochondrial proteins encoded by the same strand of the DNA from a
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diverse range of species including bird, fish, frog, lamprey, as well
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as mammals (see Adachi and Hasegawa 1996 for details). The other
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matrix (mtmam.dat) included in the package is based on the same
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proteins from mammals only.
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Adachi, J. and Hasegawa, M. (1996) MOLPHY version 2.3: programs for
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molecular phylogenetics based on maximum likelihood. Computer Science
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Monographs of Institute of Statistical Mathematics 28:1-150.
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