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37 lines
1008 B
C++
37 lines
1008 B
C++
// $Id: distable.cpp 409 2005-06-28 13:12:24Z ninio $
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#include "tree.h"
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#include "sequenceContainer.h"
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#include "mainSemphy.h"
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#include "njGamma.h"
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#include "logFile.h"
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#include "treeUtil.h"
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#include "likeDist.h"
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#include "someUtil.h"
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#include <iostream>
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#include <cassert>
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using namespace std;
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int main(int argc,char* argv[]) {
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if (argc < 2) errorMsg::reportError("The program must get some parameters in the command line, use -h for help");
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semphy_args_info args_info;
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if (semphy_cmdline_parser(argc, argv, &args_info) != 0) {
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errorMsg::reportError("error reading command line",1);
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}
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mainSemphy ms(args_info);
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stochasticProcess tmpSp(ms.getStochasticProcess());
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likeDist ld(tmpSp, 0.01);
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VVdouble disTab;
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vector<string> vNames;
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ms.getDistanceTableAndNames(disTab,vNames,&ld);
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ms.out()<<disTab<<endl<<endl;
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// // uncomment this to get list of names
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// for (int vNames_I=0;vNames_I<vNames.size();++vNames_I){
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// ms.out()<<vNames[vNames_I]<<endl;
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// }
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return 0;
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}
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