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24 lines
450 B
Plaintext
24 lines
450 B
Plaintext
#format can be mase, molphy, clustal, fasta or phylip
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format mase
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#models can be day, jtt, rev, nucjc, aaJC
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model jtt
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#AA or DNA
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alphabet 20
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#un-comment if you want to use gamma in the learning process
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#gamma
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#alpha 0.3
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#un-comment if you only want to compute the branch lengths of a given tree
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#bblonly
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#input file
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seqfile seq.txt
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#output file
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outfile run.out
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#un-comment and add tree file for know tree (or starting point)
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#treefile tree.txt
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