mirror of
http://43.156.76.180:8026/YuuMJ/EukPhylo.git
synced 2025-12-28 07:10:24 +08:00
68 lines
2.3 KiB
Plaintext
68 lines
2.3 KiB
Plaintext
lys_test0.ctree
|
|
(Langur,Human,Horse,Cow,Baboon,Rat);
|
|
Running "../semphy -H -s lys6.seq -t lys6.tree --jtt -c lys_test0.ctree -v5 -L"
|
|
|
|
START OF LOG FILE
|
|
Using uniform rates
|
|
#################################################################
|
|
# SEMPHY: A Structural EM Algorithm for Phylogenetic Inference #
|
|
# for information, please send email to semphy@cs.huji.ac.il #
|
|
#################################################################
|
|
|
|
argv = "../semphy" "-H" "-s" "lys6.seq" "-t" "lys6.tree" "--jtt" "-c" "lys_test0.ctree" "-v5" "-L"
|
|
# The log likelihood of the tree is:
|
|
-1044
|
|
# The log likelihood of the tree is:
|
|
-1044
|
|
# The tree
|
|
(((Langur:0.081000,Baboon:0.033000):0.021000,Human:0.064000):0.010000,Rat:0.288000,(Cow:0.240000,Horse:0.630000):0.106000);
|
|
# The tree
|
|
(((Langur:0.081,Baboon:0.033):0.021,Human:0.064):0.01,Rat:0.288,(Cow:0.24,Horse:0.63):0.106);
|
|
END OF LOG FILE
|
|
|
|
|
|
lys_test1-2.ctree
|
|
(Langur,Horse,(Human:0.017860,Cow:0.279822):0.072072,Baboon,Rat);
|
|
Running "../semphy -H -s lys6.seq -t lys6.tree --jtt -c lys_test1-2.ctree -v5 -L"
|
|
|
|
START OF LOG FILE
|
|
Using uniform rates
|
|
#################################################################
|
|
# SEMPHY: A Structural EM Algorithm for Phylogenetic Inference #
|
|
# for information, please send email to semphy@cs.huji.ac.il #
|
|
#################################################################
|
|
|
|
Input tree does not fit constraints!
|
|
(Cow,Human)
|
|
|
|
Please enter a starting tree that fits the constraints
|
|
|
|
Please enter a starting tree that fits the constraints
|
|
semphy: errorMsg.cpp:39: static void errorMsg::reportError(const std::string&, int): Assertion `0' failed.
|
|
Abort
|
|
|
|
|
|
lys_test1.ctree
|
|
((Human,Cow),Langur,(Rat:0.1,Baboon:0.2),Horse);
|
|
|
|
Running "../semphy -H -s lys6.seq -t lys6.tree --jtt -c lys_test1.ctree -v5 -L"
|
|
|
|
START OF LOG FILE
|
|
Using uniform rates
|
|
#################################################################
|
|
# SEMPHY: A Structural EM Algorithm for Phylogenetic Inference #
|
|
# for information, please send email to semphy@cs.huji.ac.il #
|
|
#################################################################
|
|
|
|
Input tree does not fit constraints!
|
|
(Baboon,Horse,Langur,Rat)
|
|
(Baboon,Rat)
|
|
|
|
Please enter a starting tree that fits the constraints
|
|
|
|
Please enter a starting tree that fits the constraints
|
|
semphy: errorMsg.cpp:39: static void errorMsg::reportError(const std::string&, int): Assertion `0' failed.
|
|
Abort
|
|
|
|
|