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21 lines
769 B
Plaintext
21 lines
769 B
Plaintext
likelihood computation only, with gamma and alpha optimiziation
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#################################################################
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# SEMPHY: A Structural EM Algorithm for Phylogenetic Inference #
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# for information, please send email to semphy@cs.huji.ac.il #
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#################################################################
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argv = "../semphy" "-s" "lys6.seq" "-t" "lys6.tree" "-L" "--jtt" "-A0.5" "-O"
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# Best alpha (for fixed branch lengths)
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1.48489
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# The likelihood of the tree
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-1037.11
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# Best alpha (for fixed branch lengths)
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1.48489
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# The likelihood of the tree
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-1037.11
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# The log likelihood of the tree is:
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-1037.11
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-1037.11
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# The tree
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(((Langur:0.081000,Baboon:0.033000):0.021000,Human:0.064000):0.010000,Rat:0.288000,(Cow:0.240000,Horse:0.630000):0.106000);
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