mirror of
http://43.156.76.180:8026/YuuMJ/EukPhylo.git
synced 2025-12-28 07:10:24 +08:00
17 lines
667 B
Plaintext
17 lines
667 B
Plaintext
likelihood computation after branch-length optimisation, no gamma
|
|
#################################################################
|
|
# SEMPHY: A Structural EM Algorithm for Phylogenetic Inference #
|
|
# for information, please send email to semphy@cs.huji.ac.il #
|
|
#################################################################
|
|
|
|
argv = "../semphy" "-H" "-s" "lys6.seq" "-t" "lys6.tree" "-n" "--jtt"
|
|
# The likelihood of the tree
|
|
-1043.99
|
|
# The likelihood of the tree
|
|
-1043.99
|
|
# The log likelihood of the tree is:
|
|
-1043.99
|
|
-1043.99
|
|
# The tree
|
|
(((Langur:0.081619,Baboon:0.033369):0.020954,Human:0.064506):0.010014,Rat:0.289108,(Cow:0.241165,Horse:0.633556):0.106429);
|