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21 lines
779 B
Plaintext
21 lines
779 B
Plaintext
likelihood computation only, with gamma and alpha optimiziation
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#################################################################
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# SEMPHY: A Structural EM Algorithm for Phylogenetic Inference #
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# for information, please send email to semphy@cs.huji.ac.il #
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#################################################################
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argv = "../semphy" "-s" "lys6.seq" "-t" "lys6.tree" "-n" "--jtt" "-A0.5" "-O"
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# Best alpha after branch length optimiziation
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1.38169
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# The likelihood of the tree
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-1035.8
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# Best alpha after branch length optimiziation
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1.38169
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# The likelihood of the tree
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-1035.8
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# The log likelihood of the tree is:
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-1035.8
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-1035.8
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# The tree
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(((Langur:0.083987,Baboon:0.032957):0.018445,Human:0.068531):0.001551,Rat:0.338579,(Cow:0.264533,Horse:0.812056):0.115036);
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