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29 lines
834 B
C++
29 lines
834 B
C++
// $Id: bblEMSeperate.cpp 962 2006-11-07 15:13:34Z privmane $
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#include "bblEM.h"
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#include "bblEMSeperate.h"
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#include "logFile.h"
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//#define VERBOS
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bblEMSeperate::bblEMSeperate(vector<tree>& et,
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const vector<sequenceContainer>& sc,
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const vector<stochasticProcess> &sp,
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const vector<Vdouble *> * weights,
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const int maxIterations,
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const MDOUBLE epsilon,
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const MDOUBLE tollForPairwiseDist) {
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MDOUBLE newL =0;
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for (int i=0; i < et.size(); ++i) {
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#ifdef VERBOS
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LOG(5,<<" OPTIMIZING GENE "<<i<<" ... "<<endl);
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#endif
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bblEM bblEM1(et[i],sc[i],sp[i],(weights?(*weights)[i]:NULL),maxIterations,epsilon);
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MDOUBLE resTmp = bblEM1.getTreeLikelihood();
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#ifdef VERBOS
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LOG(5,<<" GENE "<<i<<" LOG-L = "<< resTmp<<endl);
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#endif
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newL += resTmp;
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}
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_treeLikelihood = newL;
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}
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