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29 lines
594 B
C++
29 lines
594 B
C++
// $Id: likelihoodComputationFactors.h 962 2006-11-07 15:13:34Z privmane $
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#ifndef ___LIKELIHOOD_COMPUTATION_FACTORS
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#define ___LIKELIHOOD_COMPUTATION_FACTORS
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#include "definitions.h"
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#include "tree.h"
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#include "computePijComponent.h"
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#include "sequenceContainer.h"
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#include "suffStatComponent.h"
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namespace likelihoodComputation {
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MDOUBLE getLOG_LofPos(const int pos, // with a site specific rate.
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const tree& et,
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const sequenceContainer& sc,
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const stochasticProcess& sp,
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const MDOUBLE gRate);
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// add all the other functions to use factors...
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};
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#endif
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