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39 lines
1.4 KiB
Perl
39 lines
1.4 KiB
Perl
#!/usr/bin/perl
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package GUIDANCE_CONSTANTS; #don't forget: a package must end with a return value (1; in the end)!!!!!
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use GENERAL_CONSTANTS;
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# constants to use when sending e-mails using the server admin's email address.
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use constant PDB_FILE_NAME => "pdb_file.ent";
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use constant USER_MSA_FILE_NAME => "msa_file.msa";
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use constant USER_TREE_FILE_NAME => "user_tree.txt";
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use constant MAX_UPLOAD_FILE_SIZE => 20;
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use constant GUIDANCE_RESULTS_DIR => GENERAL_CONSTANTS::SERVERS_RESULTS_DIR."Guidance/";
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use constant GUIDANCE_LOGS_DIR => GENERAL_CONSTANTS::SERVERS_LOGS_DIR."Guidance/";
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use constant GUIDANCE_RESULTS_URL => GENERAL_CONSTANTS::GUIDANCE_URL."results/";
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use constant GUIDANCE_COL_FP_TP_SP_CUTOFFS => "/bioseq/Guidance/exec/mergeBpCos.columnScores.perf.100";
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use constant BOOTSTRAPS=> 100;
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use constant MAXIMUM_MODIFIED_PERCENT => 0.15;
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use constant FRAGMENT_REDUNDANCY_RATE => 95;
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use constant FRAGMENT_OVERLAP => 0.10;
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use constant FRAGMENT_MINIMUM_LENGTH => 0.60;
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use constant MINIMUM_FRAGMENTS_FOR_MSA => 5;
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use constant LOW_NUM_FRAGMENTS_FOR_MSA => 10;
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use constant PDB_FRAGMENT_MINIMUM_LENGTH => 0.50;
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use constant PDB_FRAGMENT_MINIMUM_IDENTITY => 0.35;
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use constant BAYES_INTERVAL => 3;
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use constant CONSURF_PDF_LIB => "/var/www/html/ConSurf/php/ConSurf_PDF/ConSurf_PDF_Class.php";
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use constant PROC_NUM => 2; #num of processors to use
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1;
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