EukPhylo/PTL2/Scripts-GRID/trimal-trimAl/dataset/example.084.AA.strNOG.ENOG411BNP9.fasta
Katzlab dd76ab1d12 Added PTL2 Scripts
These are PTL2 files from Auden 2/9
2023-02-14 11:20:52 -05:00

232 lines
9.8 KiB
Plaintext

>88036.EFJ12888
----------------------------------MLTPQQRLQLDESRWR
LHSVLSAAQP---------H-QCANLLLQRIDAPVSAVWPMLRRFDTPQA
YKRFVKACVIASGDGSSVGSLRNITLISGLPASCSTERLEILDDEHHIVS
FRVVGGEHRLRNYASVTSLHE-----------------------KVVTVV
MESYVVDVPEGNTREDTRVFTDTVVRCNLQSLAKICQANF-KLEQRRCQQ
QQQQQPEMASCKKDSGQDSGLILMR
>88036.EFJ17082
--------------------------------------------------
---------P---------H-QCANLLLQRIDAPVSAVWPMLRRFDTPQA
YKRFVKACVIASGDGSSVGSLRNITLISGLPASCSTERLEILDDEHHIVS
FRVVGGEHRLRNYASVTSLHE-----------------------KVVTVV
MESYVVDVPEGNTREDTRVFTDTVVRCNLQSLAKICQ-------------
-------------------------
>3711.Bra007772.1-P
-------------------------MSSSPVVK-GLTDEEHKTLE-PVIN
TYHQFEP-DP---------T-TCTSLVAQRIDAPASVVWPLIRSFDNPQR
YKHFVKSCRRVSGDGG-VGSVREVTVISGIPASTSTERLEFLDDDHRVLS
FRVVGGEHRLNNYKSVTSVNEFLNQD----------------SGRVYTVV
LESYTVDVPEGNTVEDTRMFVDTVVKLNLQKLGVIATAAPTH--------
--------------------D----
>3702.AT2G26040.1
-------------------------MSSSPAVK-GLTDEEQKTLE-PVIK
TYHQFEP-DP---------T-TCTSLITQRIHAPASVVWPLIRRFDNPER
YKHFVKRCRLISGDGD-VGSVREVTVISGLPASTSTERLEFVDDDHRVLS
FRVVGGEHRLKNYKSVTSVNEFLNQD----------------SGKVYTVV
LESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSAPMHDD------
--------------------E----
>59689.scaffold_400801.1
-------------------------MSSSPVVK-GLTDEEHKTLE-PVIK
TYHRFEP-DP---------S-TCTSLITQRIDAPASSVWPLIRRFDNPER
YKHFVKSCRLISGDGG-IGSVREVTVISGLPASTSTERLEFVDDDHRVLS
FRVVGGEHRLKNYKSVTSVNEFLNQD----------------SGKVYTVV
LESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSAPMHD-------
--------------------E----
>29760.VIT_04s0008g00890.t01
MD----------------------PHHH----H-GLTEEEFRALE-PIIQ
NYHTFEP-SP---------N-TCTSLITQKIDAPAQVVWPFVRSFENPQK
YKHFIKDCTM-RGDGG-VGSIREVTVVSGLPASTSTERLEILDDEKHILS
FRVVGGEHRLNNYRSVTSVNDFSK------------------EGKDYTIV
LESYIVDIPEGNTGEDTKMFVDTVVKLNLQKLAVVAITSL-HEN------
--------------------E----
>3694.POPTR_0006s24670.1
MD----------------------ANHAPPVPQ-GLTQEEYVELK-PLID
TYHKFGAAVP---------N-TCTSLITQRIDAPAHVVWPFVRRFDNPQK
YKHFIKSCKMSAGDGG-VGSIREVTVVSGIPASTSTERLEILDDENHILS
FRVVGGEHRLNNYKSVTSVNEFNK------------------EDKVYTIV
LESYIVDIPDGNTVEDTEMFVDTVVKLNLQKLAVVANTAL-HGH------
--------------------E----
>3694.POPTR_0018s05090.1
MD----------------------TNQAPP-PQ-GLTQEEYMELK-PLID
TYHKFEP-AP---------N-TCTSLITQRIDAPAHVVWPFVRRFDNPQK
YKHFIKSCNMSAGDGG-VGSVREVAVVSGLPASTSIERLEILDDENHILS
FRVVGGEHRLNNYKSVTSVNEFNK------------------EGKVYAIV
LESYIVDIPGGNTGEDTKMFVDTVVKLNLQKLAVVAIASL-HGH------
--------------------E----
>4113.PGSC0003DMT400077008
-M----------------------ARTNCQVPQ-GLKQEEFIELE-PLIR
NYHTFEH-LS---------N-TCTSLITQRIEAPANVVWPFVRRFDNPQK
YKHFIKSCKM-TGDGG-VGSIREVSVVSGIPASTSTERLEILDDEKHILS
FRVVGGEHRLNNYKSVTSVNGFEK------------------NGKAYTIV
LESYIVDIPQGNTGEDTKMFTDTVVKLNLQKLGVVAMAAM-HGH------
--------------------E----
>4081.Solyc12g095970.1.1
MD----------------------GDRQLLVPQ-GLTQEEFVELE-PLIR
NYHTFED-LP---------N-TCTSLVTQRIDAPVDVVWPFIRRFDNPEK
YKHFIKSCRIVSGDGG-VGSIREVTVVSGIPASTSTERLEILDDEKHILS
FRVVGGEHRLTNYKSVTSVNEFKK------------------NGKIYTIV
LESYIVDIPEGNTGEDTKMFTDTVVKLNLQKLALVAMSTM-HGH------
--------------------E----
>4113.PGSC0003DMT400075340
MD----------------------GDGQLLVPQ-GLTQEEFAELE-PLIR
NYHTFED-LP---------N-TCTSLVTQRIDAPVDVVWPFVRRFDNPEK
YKHFIKSCRIVSGDGG-VGSIREVTVVSGIPASTSTERLEILDDEKHILS
FRVVGGEHRLTNYKSVTSVNEFSK------------------NGKNYTIV
LESYIVDIPEGNTGEDTKMFTDTVVKLNLQKLALVAMSAM-HGH------
--------------------E----
>3847.GLYMA06G05440.1
----------------------MASEAYDP-VL-GLTPEEFTELE-STIN
THHKFEA-SP---------E-ICSSIIAQRIDAPAHTVWPLVRSFENPQK
YKHFVKSCNMRSGDGG-VGSIREVTVVSGLPASTSTERLEILDDDNHLLS
FRVVGGEHRLHNYRSVTSVNEFKRPD----------------NGKVYTIV
LESYVVDIPEGNTGVDTKMFVDTVVKLNLQKLGEVAMATN----------
-------------------------
>3847.GLYMA04G05380.1
----------------------MASEAYPV-L--GLTPEEFSELE-SIIN
THHKFEP-SP---------E-ICSSIIAQRIDAPAHTVWPLVRSFENPQK
YKHFVKSCNMRSGDGG-VGSIREVTVVSGLPASTSTERLEILDDDKHLLS
FRVVGGEHRLHNYRSVTSVNEFKNPD----------------NGKVYTIV
LESYVVDIPEGNTGVDTKMFVDTVVKLNLQKLGEVAMATT-TL-------
--------------------H----
>3847.GLYMA14G10730.1
MTILPHSNNKSSNHKFIAHQNYMASETHHH-VQ-GLTPEELTKLE-PIIK
KYHLFEQ-SP---------N-TCFSIITYRIEAPAKAVWPFVRSFDNPQK
YKHFIKGCNM-RGDGG-VGSIREVTVVSGLPASTSTERLEILDDDKHVLS
FRVVGGEHRLKNYRSVTSVNEFNK------------------EGKVYTIV
LESYIVDIPEGNTEEDTKMFVDTVVKLNLQKLGVVAMASSMHG-------
--------------------Q----
>3847.GLYMA17G34800.1
----------------------MASETHHH-VQ-GLTPEELTQLE-PIIK
KYHLFEA-SS---------N-KCFSIITHRIEAPASSVWPLVRNFDNPQK
YKHFIKGCNM-KGDGS-VGSIREVTVVSGLPASTSTERLEILDDDKHVLS
FRVVGGEHRLQNYRSVTSVNEFHK------------------EGKVYTIV
LESYIVDIPEGNTEEDTKMFVDTVVKLNLQKLGVVAMASSMNG-------
--------------------R----
>4641.GSMUA_Achr10P27940_001
ME----------------------PHHHASCSQ-GLTQEEMAALE-PVIR
THHTFPG-AP---------G-TCTSLITQRIDAPLQAVWPVVRRFDKPQR
YKHFIKSCSLVHGDGG-VGSVREVTVVSGIPASTSVERLEILDDDRHILS
FSVMGGEHRLKNYRSVTSVTEFHT------------------EGKAYTVV
LESYVVDIPEGNTEEDTKMFTDIVVKLNLQKLATVAMASS-PGEGRGERE
-------------------ET----
>4641.GSMUA_Achr6P00980_001
ME----------------------PNCHP--AQ-GLTQEEMAELE-PVIR
AHHTFPR-AP---------G-TCTSLITQRIDAPLCAVWPVVRSFDRPER
YKHFIKSCRLVRGDGG-VGSVREVTVVSGLPASTSVERLEILDDDRHVLS
FCVMGGEHRLRNYRSVTSVTELHR------------------EGKAYTLV
LESYVVDIPEGNTEEDTKMFTDTVVKLNLQKLAAVAMASS-RAEPCTASG
-------------------RT----
>4641.GSMUA_Achr7P09320_001
ME----------------------PHHHPP-SQ-GLTQEEMAELE-PVIR
AHHTFPP-AP---------G-TCTSLITQHIDAPLRAIWPVVRSFDRPQR
YKHFIKSCNVVHGDGG-VGSVREVTVVSGLPASTSVERLEILDDDRHILS
FRVMGGEHRLRNYRSVTSVTEFHK------------------EGKAYTVV
LESYVVDVPEGNTEEDTKMFTDVVVKLNLQKLAAVAMASS-S--------
-------------------------
>4513.MLOC_72289.1
----------------------MEAHMERALRE-GVTEAERAALE-GTVR
AHHTFPGRAP----G-----ATCTSLVAQRVAAPVRAVWPIVRSFGNPQR
YKHFVRTCALAAGDGASVGSVREVTVVSGLPASTSTERLEILDDDRHILS
FSVVGGEHRLRNYRSVTSVTEFQ--------------------PGPYCVV
VESYVVDVPDGNTEEDTRMFTDTVVKLNLQKLASVAEESGA-APGSRRRD
-------------------------
>15368.BRADI1G37810.1
----------------------MEAHMERALRE-GLTEAERASLE-GAVR
AHHTFPGRAA-----------TCTSLVAQRVAAPVRDVWPIVRSFGNPQR
YKHFVRTCALAAGDGASVGSVREVTVVSGLPASTSTERLEILDDDRHILS
FSVVGGEHRLRNYRSVTSVTEFQGQE--------------DAGAPPYCVV
LESYVVDVPPGNTEDDTRMFTDTVVKLNLQKLASVAEESGS-RTR----D
-------------------------
>39946.BGIOSGA023096-PA
----------------------MEAHVERALRE-GLTEEERAALE-PAVM
AHHTFPPSTT----TATTAAATCTSLVTQRVAAPVRAVWPIVRSFGNPQR
YKHFVRTCALAAGDGASVGSVREVTVVSGLPASTSTERLEMLDDDRHIIS
FRVVGGQHRLRNYRSVTSVTEFQPPA------------AGPGPAPPYCVV
VESYVVDVPDGNTAEDTRMFTDTVVKLNLQMLAAVAEDSSS-ASRRR--D
-------------------------
>39947.LOC_Os06g36670.1
----------------------MEAHVERALRE-GLTEEERAALE-PAVM
AHHTFPPSTT----TATTAAATCTSLVTQRVAAPVRAVWPIVRSFGNPQR
YKHFVRTCALAAGDGASVGSVREVTVVSGLPASTSTERLEMLDDDRHIIS
FRVVGGQHRLRNYRSVTSVTEFQPPA------------AGPGPAPPYCVV
VESYVVDVPDGNTAEDTRMFTDTVVKLNLQMLAAVAEDSSS-ASRRR--D
-------------------------
>4533.OB06G26150.1
----------------------MEAHVERALRE-GLTEEERAALE-PAVL
AHHTFPGRAAAPAEGAAAATATATSLVTQHVAAPLRAVWPIVRSFGNPQR
YKHFVRTCALAEGDGASVGSVREVAVVSGLPASTSTERLEILDDDRHIIS
FRVLGGQHRLRNYRSVTSVTEFQPQ---------------PGAPSPYCVV
VESYVVDVPDGNTEDDTRMFTDTVVKLNLQKLAAVAEESAA-SSASRRRD
-------------------------
>4555.Si008300m
----------------------MEAHVERALRA-TLTEAEARALE-GTVH
EHHTFPGRSRAG-AGAAAAAATCTSLVAQRVSAPVRCVWPIVRSFGNPQR
YKHFVRTCALAAGDGASVGSVREVTVVSGLPASSSTERLEVLDDDRHILS
FRVVGGDHRLRNYRSVTSVTEFQRQH--------------PAGGPPYCVV
VESYVVDVPEGNTEEDTRMFTDTVVRLNLQRLAAVAEESAG-GGR----S
-------------------------
>4558.Sb10g022200.1
----------------------METHVERALRA-TLTEAEVRALE-PAVR
EHHTFPAGRVAA-GTTTPTPTTCTSLVAQRVSAPVRAVWPIVRSFGNPQR
YKHFVRTCALAAGDGASVGSVREVTVVSGLPASSSTERLEVLDDDRHILS
FRVVGGDHRLRNYRSVTSVTEFQ--------------------PGPYCVV
VESYAVDVPEGNTAEDTRMFTDTVVRLNLQKLAAVAEESAA-AAAAGNRR
-------------------------
>15368.BRADI3G08580.1
----------------------MEPHMERALRE-ALTEAERRSLA-PVVA
AHHTFPGSGQSSPSPSPGKKKTCTSLVTQRVDAPLAAVWAIVRGFATPQR
YKHFIKSCALAAGDGATVGSVREVTVVSGLPASTSTERLEILDDDRHVLS
FRVVGGEHRLRNYRSVTSVTEFSSPPPPEPEEKEKEETQDAAASSSYCVV
VESYVVDVPEGNTEEDTRMFTDTVVKLNLQKLAAIATTSTS-SPSASPSS
PPPPQPS-----------DGAQADH
>4513.MLOC_39291.1
----------------------MEHHMESALRQ-GLTEPERRELE-GVVE
EHHTFPGRA---------SG-TCTSLVTQRVQAPLAAVWDIVRGFANPQR
YKHFIKSCALAAGDGATVGSVREVTVVSGLPASTSTERLEILDDDRHILS
FCVVGGEHRLRNYRSVTSVTEFTDQP----------------SGPSYCVV
VESYVVDVPEGNTEEDTRMFTDTVVKLNLQKLAAIATTTSS-PPPLDGQS
-------------------------
>4538.ORGLA02G0084300.1
----------------------MEPHMERALREAVASEEERRELE-GVVR
AHHTFPAAERA---AGPWRRPTCTSLVAQRVDAPLAAVWPIVRGFANPQR
YKHFIKSCELAAGDGATVGSVREVAVVSGLPASTSTERLEILDDDRHVLS
FRVVGGDHRLRNYRSVTSVTEFSSPS------------SPPSPSRPYCVV
VESYVVDVPEGNTEEDTRMFTDTVVKLNLQKLAAVATSSSP-PAA-----
---GNHH------------------
>39946.BGIOSGA006847-PA
----------------------MEPHMERALREAVASEAERRELE-GVVR
AHHTFPAAERA---AGPGRRPTCTSLVAQRVDAPLAAVWPIVRGFANPQR
YKHFIKSCELAAGDGATVGSVREVAVVSGLPASTSTERLEILDDDRHVLS
FRVVGGDHRLRNYRSVTSVTEFSSPS------------SPPSPPRPYCVV
VESYVVDVPEGNTEEDTRMFTDTVVKLNLQKLAAVATSSSP-PAA-----
---GNHH------------------
>39947.LOC_Os02g13330.1
----------------------MEPHMERALREAVASEAERRELE-GVVR
AHHTFPAAERA---AGPGRRPTCTSLVAQRVDAPLAAVWPIVRGFANPQR
YKHFIKSCELAAGDGATVGSVREVAVVSGLPASTSTERLEILDDDRHVLS
FRVVGGDHRLRNYRSVTSVTEFSSPS---------------SPPRPYCVV
VESYVVDVPEGNTEEDTRMFTDTVVKLNLQKLAAVATSSSP-PAA-----
---GNHH------------------
>4558.Sb04g008040.1
----------------------MEPHMETALRQGGLSELEQRELE-PVVR
AHHTFPGRS---------PGTTCTSLVTQRVDAPLSAVWPIVRGFAAPQR
YKHFIKSCDLRSGDGATVGSVREVTVVSGLPASTSTERLEILDDDRHILS
FRVVGGDHRLRNYRSVTSVTEFHHHH------------Q-AAAGRPYCVV
VESYVVDVPEGNTEEDTRMFTDTVVKLNLQKLAAIATSSAA-AAA-----
---SNSS-----------T------
>4577.GRMZM2G154987_P01
----------------------MEPHMESALRQ-GLSEAEQRELE-GVVR
AHHTFPGRA---------PG-TCTSLVTQRVDAPLAAVWPIVRGFGSPQR
YKHFIKSCDLKAGDGATVGSVREVTVVSGLPASTSTERLEILDDHRHILS
FRVVGGDHRLRNYRSVTSVTEFQP--------------------GPYCVV
LESYVVDVPDGNTEEDTRMFTDTVVKLNLQKLAAIATSSSA-N-------
-------------------------
>4555.Si018378m
----------------------MEPHMEGALRQ-GLSEAEQRELE-SVVR
AHHTFPGRA---------PG-TCTSLVTQRVDAPLAAVWPIVRGFASPQR
YKHFIKSCDLRSGDGATVGSVREVTVVSGLPASTSTERLEILDDDRHILS
FRVVGGDHRLRNYRSVTSVTEFQP--------------------GPYCVV
VESYVVDVPEGNTEEDTRMFTDTVVKLNLQKLAAIATSSSS-SPR-----
---PSGG-----------GGGGTDH