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16 lines
814 B
Bash
16 lines
814 B
Bash
#!/bin/bash
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## Last updated Jan 2025 by Auden Cote-L'Heureux
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## This script is intended to be used to process genomic CDS with EukPhylo part 1 on an HPC that uses the Slurm workload manager.
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## The first part of the script are Slurm-specific parameters that should be adjusted by users to fit their resource allocation
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## needs and restrictions, followed by some example commands taken from the GitHub Wiki, more detail for which can be found
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## here: https://github.com/Katzlab/EukPhylo/wiki/EukPhylo-Part-1:-GF-assignment
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## Example commands
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# A simple run that goes from script 1 to script 7 (the last script) using the Universal genetic code
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python3 Scripts/wrapper.py --first_script 1 --last_script 7 --assembled_transcripts AssembledTranscripts --genetic_code Gcode.txt --databases Databases > log.out
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