diff --git a/EukPhylo-Part-2:-MSAs,-trees,-and-contamination-loop.md b/EukPhylo-Part-2:-MSAs,-trees,-and-contamination-loop.md index efda76b..db8ede6 100644 --- a/EukPhylo-Part-2:-MSAs,-trees,-and-contamination-loop.md +++ b/EukPhylo-Part-2:-MSAs,-trees,-and-contamination-loop.md @@ -138,7 +138,7 @@ After homology assessment and building MSAs (the Guidance step), EukPhylo trims Argument | Default | Choices | Description -- | -- | -- | -- ---tree_method | iqtree | iqtree, iqtree_fast, raxml, fasttree | Program to use for tree-building. +--tree_method | iqtree_fast | iqtree, iqtree_fast, raxml, fasttree | Program to use for tree-building. ## Contamination loop