From 05bf14eea91c04cf691c1923cc4f1c5f0621d2cd Mon Sep 17 00:00:00 2001 From: "Godwin N. Ani" Date: Mon, 7 Apr 2025 15:00:54 -0400 Subject: [PATCH] Updated EukPhylo Part 2: MSAs, trees, and contamination loop (markdown) --- EukPhylo-Part-2:-MSAs,-trees,-and-contamination-loop.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/EukPhylo-Part-2:-MSAs,-trees,-and-contamination-loop.md b/EukPhylo-Part-2:-MSAs,-trees,-and-contamination-loop.md index efda76b..db8ede6 100644 --- a/EukPhylo-Part-2:-MSAs,-trees,-and-contamination-loop.md +++ b/EukPhylo-Part-2:-MSAs,-trees,-and-contamination-loop.md @@ -138,7 +138,7 @@ After homology assessment and building MSAs (the Guidance step), EukPhylo trims Argument | Default | Choices | Description -- | -- | -- | -- ---tree_method | iqtree | iqtree, iqtree_fast, raxml, fasttree | Program to use for tree-building. +--tree_method | iqtree_fast | iqtree, iqtree_fast, raxml, fasttree | Program to use for tree-building. ## Contamination loop