YuuMJ1997/EukPhylo
1
0
Fork 0
mirror of http://43.156.76.180:8026/YuuMJ/EukPhylo.git synced 2025-12-27 03:30:25 +08:00
Code Issues Packages Projects Releases Wiki Activity

Updated Home (markdown)

Katzlab 2024-08-12 10:19:20 -04:00
parent b83a6cd098
commit 08a9678dd4
1 changed files with 2 additions and 2 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

4
Home.md

@ -5,7 +5,7 @@ The core PhyloToL pipeline comprises two main components, which we refer to as P
We also provide a suite of utility scripts for describing data output by PhyloToL (e.g. basic sequence statistics such as composition, coverage, and length) as well as performing some of PhyloToL's more complex operations (e.g. "clade-grabbing") in a stand-alone form.
## PhyloToL Part 1 – Gene family assignment
* [Overview & modularity](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1:-gf-assignment#overview-and-modularity)
* [Overview and modularity](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1:-gf-assignment#overview-and-modularity)
* [Setup](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1:-gf-assignment#setup)
* [The Hook Database](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1:-gf-assignment#the-hook-database)
* [Running PhyloToL Part 1](https://github.com/Katzlab/PhyloToL-6/wiki/PhyloToL-Part-1:-gf-assignment#running-phylotol-part-1)
@ -13,7 +13,7 @@ We also provide a suite of utility scripts for describing data output by PhyloTo
* [Processing genomes](https://github.com/Katzlab/PhyloToL-6/wiki/Part1phylotol-part-1:-gf-assignment#processing-genomes)
## PhyloToL Part 2 – MSAs, gene trees, species trees
* [Overview & modularity](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-2:-MSAs,-trees,-and-contamination-loop#overview-and-modularity)
* [Overview and modularity](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-2:-MSAs,-trees,-and-contamination-loop#overview-and-modularity)
* [Setup](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-2#setup)
* [Databases]
* [Running PhyloToL Part 2]