diff --git a/EukPhylo-QuickStart.md b/EukPhylo-QuickStart.md index 539d3dc..dd7c220 100644 --- a/EukPhylo-QuickStart.md +++ b/EukPhylo-QuickStart.md @@ -5,20 +5,15 @@ The [docker file](https://github.com/Katzlab/EukPhylo/blob/Docker/PTL2/Dockerfile) can be executed with: ```bash -cd EukPhylo - # Build the container -docker build -t Dockerfile . --tag MyEuk:1 - -# Get the container IMAGE_ID -docker image list +docker build -f Dockerfile.txt . --tag eukphylo:1 # Current command is: docker run -it \ --mount type=bind,src=$(pwd)/databases,dst=/Databases \ --mount type=bind,src=$(pwd)/input_data,dst=/Input_data \ --mount type=bind,src=$(pwd)/output_data,dst=/Output_data \ - {IMAGE_ID} + eukphylo:1 ``` After development, GitHub CICD workflows can be added to automatically build and release the dockerfile for the end user.