From 0c65fdda6f260443763c711b7fa9dc5815111f53 Mon Sep 17 00:00:00 2001
From: Godwin Ani <aniigodwinn@gmail.com>
Date: Wed, 5 Mar 2025 16:28:38 -0500
Subject: [PATCH] Updated EukPhylo QuickStart (markdown)

---
 EukPhylo-QuickStart.md | 9 ++-------
 1 file changed, 2 insertions(+), 7 deletions(-)

diff --git a/EukPhylo-QuickStart.md b/EukPhylo-QuickStart.md
index 539d3dc..dd7c220 100644
--- a/EukPhylo-QuickStart.md
+++ b/EukPhylo-QuickStart.md
@@ -5,20 +5,15 @@
 The [docker file](https://github.com/Katzlab/EukPhylo/blob/Docker/PTL2/Dockerfile) can be executed with:
 
 ```bash
-cd EukPhylo
-
 # Build the container
-docker build -t Dockerfile . --tag MyEuk:1
-
-# Get the container IMAGE_ID
-docker image list
+docker build -f Dockerfile.txt . --tag eukphylo:1
 
 # Current command is:
 docker run -it \
     --mount type=bind,src=$(pwd)/databases,dst=/Databases \
     --mount type=bind,src=$(pwd)/input_data,dst=/Input_data \
     --mount type=bind,src=$(pwd)/output_data,dst=/Output_data \
-    {IMAGE_ID}
+    eukphylo:1
 ```
 
 After development, GitHub CICD workflows can be added to automatically build and release the dockerfile for the end user.