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@@ -8,8 +8,9 @@ We also provide a suite of utility scripts for describing data output by PhyloTo
 * [Overview & modularity](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1#overview-and-modularity)
 * [Setup](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1#setup)
 * [The Hook Database](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1#the-hook-database)
-* [Processing transcriptomes](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1#processing-transcriptomes)
-* [Processing genomes](https://github.com/Katzlab/PhyloToL-6/wiki/Part1phylotol-part-1#processing-genomes)
+* [Running]
+> ** [Processing transcriptomes](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1#processing-transcriptomes)
+> ** [Processing genomes](https://github.com/Katzlab/PhyloToL-6/wiki/Part1phylotol-part-1#processing-genomes)
 
 ## PhyloToL Part 2
 * [Overview & modularity](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-2#overview-and-modularity)