From 12fb0bb9038889332b5f353de095c5c0709fb061 Mon Sep 17 00:00:00 2001 From: Auden Cote-L'Heureux <52716489+AudenCote@users.noreply.github.com> Date: Fri, 28 Mar 2025 15:50:30 -0400 Subject: [PATCH] Updated EukPhylo Part 2: MSAs, trees, and contamination loop (markdown) --- EukPhylo-Part-2:-MSAs,-trees,-and-contamination-loop.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/EukPhylo-Part-2:-MSAs,-trees,-and-contamination-loop.md b/EukPhylo-Part-2:-MSAs,-trees,-and-contamination-loop.md index 40241fc..efda76b 100644 --- a/EukPhylo-Part-2:-MSAs,-trees,-and-contamination-loop.md +++ b/EukPhylo-Part-2:-MSAs,-trees,-and-contamination-loop.md @@ -194,7 +194,7 @@ You can also change the tree-building method using the `--cl_tree_method` argume #### Sisters/subsisters mode -Below are the parameters for running sisters/subsisters. You must give a rules file to EITHER --sister_rules or --subsister_rules, or both. +Below are the parameters for running sisters/subsisters. You must give a rules file to EITHER `--sister_rules` or `--subsister_rules`, or both. | Parameter | Required | Options | Description | Default | | ------------- | ------------- | ------------- | ------------- | ------------- |