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Updated Utilities (markdown)

Katzlab 2024-08-09 17:53:48 -04:00
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Utilities.md

@ -2,7 +2,7 @@ PhyloToL 6 includes a set of stand-alone utility scripts that aim to increase th
A summary of some of the scripts is divided by category here
| Input | [Script name](https://github.com/Katzlab/PhyloToL-6/tree/main/Utilities) | Intent | Output |
| Category | [Script name](https://github.com/Katzlab/PhyloToL-6/tree/main/Utilities) | Intent | Output |
| ----------------------------- | ------------------------------------------------------------------------ | ---------------------------------------------------------------------------------- | -------------------------------------------------------------------------- |
| Assembly and fasta tools | Assess_transcriptomes_v2.0.py | Calculates the length, GC content, and coverage of assembled files | Spreadsheet containing the length, coverage, and GC of each transcript. |
| | Cluster_v2.0.py | Clusters sequences in a fasta file | Clustered fasta files |