diff --git a/QuickStart-EukPhylo.md b/QuickStart-EukPhylo.md index 530cead..c2ffb0c 100644 --- a/QuickStart-EukPhylo.md +++ b/QuickStart-EukPhylo.md @@ -121,9 +121,9 @@ If a user choose to use their own gene families database, they need to replace t ## Running ### Basic running for building MSAs and Trees - +``` python3 Scripts/phylotol.py --start raw --end trees --gf_list listofOGs.txt --taxon_list taxon_list.txt --data OutgroupR2Gs --output Output_folder > Output1.out - +``` For information on each of the possible input parameters, read below and run “python phylotol.py --help”