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Updated QuickStart EukPhylo (markdown)

Godwin Ani 2025-01-27 15:27:11 -05:00
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QuickStart-EukPhylo.md

@ -62,7 +62,7 @@ Here add detail of each option possible:
### Output: ### Output:
> ReadyToGo = AA, NTD > ReadyToGo = AA, NTD
> Sequences statistics and summary > Summary and statistics of sequences
### Modularity of options and replacing the Hook database ### Modularity of options and replacing the Hook database
EukPhylo part 1 for transcriptomes is composed of 7 scripts. User can choose to start or stop at each step by changing the -1 and/or -2 options. EukPhylo part 1 for transcriptomes is composed of 7 scripts. User can choose to start or stop at each step by changing the -1 and/or -2 options.
@ -95,8 +95,9 @@ Here add detail of each options possible:
* log.txt = if added to the end of the command, it will output a log file with progress, warning, or error messages * log.txt = if added to the end of the command, it will output a log file with progress, warning, or error messages
### Output: ### Output:
> ReadyToGo = AA, NTD > ReadyToGo files = AA, NTD
> Sequences statistics and summary
> Summary and statistics of sequences
### Modularity of options and replacing the Hook database ### Modularity of options and replacing the Hook database
EukPhylo part 1 for genomes is composed of 5 scripts. User can choose to start or stop at each step by changing the -1 and/or -2 options. EukPhylo part 1 for genomes is composed of 5 scripts. User can choose to start or stop at each step by changing the -1 and/or -2 options.