diff --git a/QuickStart-EukPhylo.md b/QuickStart-EukPhylo.md index 76a0b94..3285346 100644 --- a/QuickStart-EukPhylo.md +++ b/QuickStart-EukPhylo.md @@ -25,15 +25,15 @@ Dependencies & third party tools, along with the versions that we use at the Kat * RAxML (8.2.12) * BLAST+ (2.9.0) * Vsearch (2.21.1, compiled with GCC 10.3.0) -* Python libraries (can be installed with Pip) +* Python (3.9.6, libraries can be installed with Pip) * ETE3 (pip install ete3) -* BioPython +* BioPython (1.79-foss-2021b) * tqdm # EukPhylo part 1 = Assigning Gene families -EukPhylo part 1 runs CDS or assembled transcripts through several scripts in order (7 for transcriptomes, 5 for genomes). These scripts are run through a ‘wrapper’ script. +EukPhylo part 1 runs CDS (genome) or assembled transcripts (transcriptome) through several scripts in order (5 for CDS, 7 for assembled transcripts). These scripts are run through a ‘wrapper’ script. ## Transcriptomes: ### Set Up: