diff --git a/PhyloToL-Part-1:-GF-assignment.md b/PhyloToL-Part-1:-GF-assignment.md index cc42d50..77f5a53 100644 --- a/PhyloToL-Part-1:-GF-assignment.md +++ b/PhyloToL-Part-1:-GF-assignment.md @@ -71,4 +71,9 @@ Replacing the PhyloToL Hook DB with a user-defined set of gene families is strai Role of each script +Main inputs : A folder containing the assembled transcripts, a folder containing the Databases, and a folder containing the scripts. +Optional inputs : Gcodes.txt and Conspecific.txt +Outputs : ReadyToGo files (AA and NTD), taxon summary, and sequence summary. + + ### Processing genomes