From 2391ea464d4589325e3adacad499fb48e2b0cec0 Mon Sep 17 00:00:00 2001
From: Godwin Ani <aniigodwinn@gmail.com>
Date: Mon, 12 Aug 2024 12:12:22 -0400
Subject: [PATCH] Updated PhyloToL Part 1: GF assignment (markdown)

---
 PhyloToL-Part-1:-GF-assignment.md | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/PhyloToL-Part-1:-GF-assignment.md b/PhyloToL-Part-1:-GF-assignment.md
index cc42d50..77f5a53 100644
--- a/PhyloToL-Part-1:-GF-assignment.md
+++ b/PhyloToL-Part-1:-GF-assignment.md
@@ -71,4 +71,9 @@ Replacing the PhyloToL Hook DB with a user-defined set of gene families is strai
 Role of each script
 <img src="https://github.com/Katzlab/PhyloToL-6/blob/main/Other/PTL1_Processing_Transcriptomes_scripts.png" width="100%">
 
+Main inputs : A folder containing the assembled transcripts, a folder containing the Databases, and a folder containing the scripts.
+Optional inputs : Gcodes.txt and Conspecific.txt
+Outputs : ReadyToGo files (AA and NTD), taxon summary, and sequence summary. 
+
+
 ### Processing genomes