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Updated PhyloToL Part 1: GF assignment (markdown)

Godwin Ani 2024-08-12 12:46:28 -04:00
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PhyloToL-Part-1:-GF-assignment.md

@ -75,7 +75,7 @@ Role of each script
* Outputs : ReadyToGo files (AA and NTD), taxon summary, and sequence summary. * Outputs : ReadyToGo files (AA and NTD), taxon summary, and sequence summary.
* *Optional inputs : Gcodes.txt and Conspecific.txt * *Optional inputs : Gcodes.txt and Conspecific.txt
* *The Gcodes.txt is a tab separated txt file containing the genetic code of the taxa. This will most likely not be needed except for some organisms like ciliates. * *The Gcodes.txt is a tab separated txt file containing the genetic code of the taxa. This will most likely not be needed except for some organisms like ciliates.
* Example: * _Example:_
| Taxa | Genetic code | | Taxa | Genetic code |
| ----------- | --------- | | ----------- | --------- |
@ -85,6 +85,7 @@ Role of each script
| Sr_ci_Bjap | Blepharisma | | Sr_ci_Bjap | Blepharisma |
* *The Conspecific.txt is similar and is only needed for cross plate contamination removal. * *The Conspecific.txt is similar and is only needed for cross plate contamination removal.
* _Example:_
| Taxa | plate| | Taxa | plate|
| ----------- | ----------------- | | ----------- | ----------------- |