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Updated QuickStart EukPhylo (markdown)

Godwin Ani 2025-01-27 15:05:11 -05:00
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QuickStart-EukPhylo.md

@ -47,9 +47,9 @@ EukPhylo part 1 runs CDS (genome) or assembled transcripts (transcriptome) throu
* A folder called “Scripts” filled with scripts from [here](https://github.com/Katzlab/PhyloToL-6/tree/main/PTL1/Transcriptomes/Scripts) on Github * A folder called “Scripts” filled with scripts from [here](https://github.com/Katzlab/PhyloToL-6/tree/main/PTL1/Transcriptomes/Scripts) on Github
### Running: ### Running:
''' ```
python wrapper.py -1 1 -2 7 --assembled_transcripts AssembledTranscripts -o Output_Folder --genetic_code Universal -d Databases > log.txt python wrapper.py -1 1 -2 7 --assembled_transcripts AssembledTranscripts -o Output_Folder --genetic_code Universal -d Databases > log.txt
''' ```
Here add detail of each option possible: Here add detail of each option possible:
* -1 = start script * -1 = start script
* -2 = end script * -2 = end script