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Updated EukPhylo QuickStart (markdown)
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> > Note: The EukPhylo pipeline is currently being dockerised for easier installation and use. This is still in progress so please do not install. More information about the dockerfile can be found here - [Docker branch](https://github.com/Katzlab/EukPhylo/tree/Docker)
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> Note: The EukPhylo pipeline is currently being dockerised for easier installation and use. This is still in progress so please do not install. More information about the dockerfile can be found here - [Docker branch](https://github.com/Katzlab/EukPhylo/tree/Docker)
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## Dockerfile
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Users will need to have the docker software running and installed. The [docker file](https://github.com/Katzlab/EukPhylo/blob/Docker/PTL2/Dockerfile) for part 2 can be executed with:
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