diff --git a/EukPhylo-QuickStart.md b/EukPhylo-QuickStart.md index 57399e1..9002d16 100644 --- a/EukPhylo-QuickStart.md +++ b/EukPhylo-QuickStart.md @@ -139,10 +139,10 @@ For additional input parameter options, see table below or run: `python phylotol Below are several optional ways to parameterize EukPhylo Part 2 **General:** -|Parameter|Options|Help| -|:---|:---|:---| -|`--force`|action = store_true|Overwrites all existing files in the `Output` folder| -|`--tree_method`|default = `iqtree`, choices = {`iqtree`, `raxml`, `all`|Change tree building software| +|Parameter|Options|Description|Default| +|:---|:---|:---|:---| +|`--force`||Overwrites all existing files in the `Output` folder| +|`--tree_method`|`iqtree`, `iqtree_fast`, `raxml`, `fasttree`|Change tree building software|`iqtree`| **For BLAST and GUIDANCE:** |Parameter|Options|Description|Default|