diff --git a/PhyloToL-Part-1.md b/PhyloToL-Part-1.md index 94b07ee..ff4cd21 100644 --- a/PhyloToL-Part-1.md +++ b/PhyloToL-Part-1.md @@ -58,18 +58,9 @@ PhyloToL6 is designed to have an interchangeable hook. As the Hook database is r ###Swapping out the hook What to know about using your own hook: -* -The hook lives in the Databases folder, specifically the db_OG folder -* -The fasta file contains ….. -The diamond file contains ….. -It is recommended that you create your own diamond database using your fasta file, so you can be sure that diamond will be compatible with your computer’s version -To do this, do the following command -diamond makedb --in -d .dmnd -Be aware that you must give your fasta file and your diamond file the same exact name, or else your run will fail at the end -For example, the Katzlab Hook-6.6 files are named: -Hook-6.6.fasta -Hook-6.6.dmnd +* You will need two files, a fasta file with your target sequences, and this same file reformatted as a diamond database (diamond makedb --in -d .dmnd) +* The hook lives in the db_OG database folder +* Be aware that you must give your fasta file and your diamond file the same exact prefix, or else your run will fail at the end. For example, the Katzlab Hook-6.6 files are named: Hook-6.6.fasta, Hook-6.6.dmnd