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Updated TroubleShooting & FAQs (markdown)

Katzlab 2024-08-14 05:05:09 -04:00
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TroubleShooting-&-FAQs.md

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* failure to control names of sequences (search for 10 digit code throughout wiki) * failure to control names of sequences (search for 10 digit code throughout wiki)
# [FAQs](https://github.com/Katzlab/PhyloToL-6/wiki/TroubleShooting-&-FAQs#FAQs) # [FAQs](https://github.com/Katzlab/PhyloToL-6/wiki/TroubleShooting-&-FAQs#FAQs)
* Where can I find the figures and databases referred to here ## Where can I find the figures and databases referred to here
> Most items are found in our [figshare folder](https://figshare.com/account/home#/projects/196552) * Most items are found in our [figshare folder](https://figshare.com/account/home#/projects/196552)
* How do I set up my names and fasta files? ## How do I set up my names and fasta files?
> Required elements are: * Required elements are:
> * unique 10 digit code for each taxon (e.g. Op_me_Hsap for humans, Ba_pg_Ecol for _E. coli_) > * unique 10 digit code for each taxon (e.g. Op_me_Hsap for humans, Ba_pg_Ecol for _E. coli_)
> * some unique identifier > * some unique identifier
> * for Part 2, each sequence name should end with a 10 digit code for each gene family (e.g. OG6_123456) > * for Part 2, each sequence name should end with a 10 digit code for each gene family (e.g. OG6_123456)