From 3ebfb86ecffc74868d5abf5ebcb3205de438b3ed Mon Sep 17 00:00:00 2001 From: Godwin Ani Date: Fri, 24 Jan 2025 16:33:13 -0500 Subject: [PATCH] Updated QuickStart EukPhylo (markdown) --- QuickStart-EukPhylo.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/QuickStart-EukPhylo.md b/QuickStart-EukPhylo.md index 231ce6c..fbe1b52 100644 --- a/QuickStart-EukPhylo.md +++ b/QuickStart-EukPhylo.md @@ -40,10 +40,10 @@ EukPhylo part 1 runs CDS (genome) or assembled transcripts (transcriptome) throu * A folder called “AssembledTranscripts” with your assembled transcript fasta files * A folder called “Databases” with the three sub folders: * db_BvsE (how we ID likely-bacterial sequences) -* * db_StopFreq (for stop codon assignment) -* * db_OG -* * * Hook *.dmnd file ([Current version Hook-6.6.dmnd]) -* * * Hook *.fasta file ([Current version Hook-6.6.fasta]) + * db_StopFreq (for stop codon assignment) + * db_OG + * Hook *.dmnd file ([Current version Hook-6.6.dmnd]) + * Hook *.fasta file ([Current version Hook-6.6.fasta]) * A folder called “Scripts” filled with scripts from [here](https://github.com/Katzlab/PhyloToL-6/tree/main/PTL1/Transcriptomes/Scripts) on Github ### Running: