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Updated QuickStart EukPhylo (markdown)

MCLeleu 2025-01-24 16:31:09 +01:00
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QuickStart-EukPhylo.md

@ -158,3 +158,8 @@ Here is a list of options or parameters user can add to the basic command line:
* Removing sequences based on GC composition * Removing sequences based on GC composition
* * This needs first to identify the sequences by OGA, OGG, OG6, with the utility script OGidentifiers.py * * This needs first to identify the sequences by OGA, OGG, OG6, with the utility script OGidentifiers.py
* * '--og_identifier', default = 'OG', choices = {'OG','OG6','OGA','OGG'}, help = 'Program to use for selecting seq by GC width') * * '--og_identifier', default = 'OG', choices = {'OG','OG6','OGA','OGG'}, help = 'Program to use for selecting seq by GC width')
### Contamination Removal
### Concatenation