From 4d3b5a1830604b030784952c80b16f8dc0fddeb0 Mon Sep 17 00:00:00 2001 From: Godwin Ani Date: Mon, 12 Aug 2024 13:09:58 -0400 Subject: [PATCH] Updated PhyloToL Part 1: GF assignment (markdown) --- PhyloToL-Part-1:-GF-assignment.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/PhyloToL-Part-1:-GF-assignment.md b/PhyloToL-Part-1:-GF-assignment.md index 1a6d523..672820b 100644 --- a/PhyloToL-Part-1:-GF-assignment.md +++ b/PhyloToL-Part-1:-GF-assignment.md @@ -71,7 +71,7 @@ Replacing the PhyloToL Hook DB with a user-defined set of gene families is strai Role of each script -* **Main inputs** : A folder containing the assembled transcripts, a folder containing the Databases, and a folder containing the [Scripts](https://github.com/Katzlab/PhyloToL-6/tree/main/PTL1/Transcriptomes/Scripts). +* **Main inputs** : A folder containing the assembled [transcripts](https://github.com/Katzlab/PhyloToL-6/tree/main/PTL1/Transcriptomes/TestData), a folder containing the Databases, and a folder containing the [Scripts](https://github.com/Katzlab/PhyloToL-6/tree/main/PTL1/Transcriptomes/Scripts). * **Outputs** : ReadyToGo files (AA and NTD) and taxon summary. * *Optional inputs : Gcodes.txt and Conspecific.txt * *The Gcodes.txt is a tab separated txt file containing the genetic code of the taxa. This will most likely not be needed except for some organisms like ciliates.