Updated Home (markdown)

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* Appendices
##PhyloToL Part 2 = generating MSAs and gene trees
Overview of the process
Producing MSA - curated or not (PreG - Guidance)
Filtering on GC3 content
Making Trees
Contamination loop - additional curation
* Overview of the process
* Producing MSA - curated or not (PreG - Guidance)
* Filtering on GC3 content
* Making Trees
* Contamination loop - additional curation
## Databases
PTL6-Hook