From 56305549e9940e63d88ef84ac851990d4f77c7da Mon Sep 17 00:00:00 2001 From: Katzlab Date: Fri, 9 Aug 2024 17:56:43 -0400 Subject: [PATCH] Updated Utilities (markdown) --- Utilities.md | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/Utilities.md b/Utilities.md index 7a30432..280bc04 100644 --- a/Utilities.md +++ b/Utilities.md @@ -1,4 +1,6 @@ -PhyloToL 6 includes a set of stand-alone utility scripts that aim to increase the power of the analysis done with or without the core PhyloToL pipeline. We divide these scripts into five main categories: basic statistics, composition tools, MSA tools, gene tree description, and contamination removal. All utilities are written in Python and contain headers that provide information on usage. +PhyloToL 6 includes a set of stand-alone utility scripts that aim to increase the power of the analysis done with or without the core PhyloToL pipeline. We divide these scripts into five main categories: assembly and fasta tools, sequence composition, MSA tools, gene tree descriptions and stand alone clade grabbing. + +All utilities are written in Python and contain headers that provide information on usage. A summary of some of the scripts is divided by category here