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@@ -6,11 +6,11 @@ We also provide a suite of utility scripts for describing data output by PhyloTo
 
 ## PhyloToL Part 1 – Gene family assignment
 * [Overview & modularity](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1:-gf-assignment#overview-and-modularity)
-* [Setup](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1#setup)
-* [The Hook Database](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1#the-hook-database)
-* [Running PhyloToL Part 1](https://github.com/Katzlab/PhyloToL-6/wiki/PhyloToL-Part-1#running-phylotol-part-1)
-  * [Processing transcriptomes](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1#processing-transcriptomes)
-  * [Processing genomes](https://github.com/Katzlab/PhyloToL-6/wiki/Part1phylotol-part-1#processing-genomes)
+* [Setup](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1:-gf-assignment#setup)
+* [The Hook Database](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1:-gf-assignment#the-hook-database)
+* [Running PhyloToL Part 1](https://github.com/Katzlab/PhyloToL-6/wiki/PhyloToL-Part-1:-gf-assignment#running-phylotol-part-1)
+  * [Processing transcriptomes](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1:-gf-assignment#processing-transcriptomes)
+  * [Processing genomes](https://github.com/Katzlab/PhyloToL-6/wiki/Part1phylotol-part-1:-gf-assignment#processing-genomes)
 
 ## PhyloToL Part 2 – MSAs, gene trees, species trees
 * [Overview & modularity](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-2#overview-and-modularity)