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Updated PhyloToL Part 1: GF assignment (markdown)

Godwin Ani 2024-08-12 12:28:17 -04:00
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PhyloToL-Part-1:-GF-assignment.md

@ -73,9 +73,9 @@ Role of each script
* Main inputs : A folder containing the assembled transcripts, a folder containing the Databases, and a folder containing the scripts. * Main inputs : A folder containing the assembled transcripts, a folder containing the Databases, and a folder containing the scripts.
* Outputs : ReadyToGo files (AA and NTD), taxon summary, and sequence summary. * Outputs : ReadyToGo files (AA and NTD), taxon summary, and sequence summary.
** *Optional inputs : Gcodes.txt and Conspecific.txt * `Optional inputs : Gcodes.txt and Conspecific.txt`
** *The Gcodes.txt is a tab separated txt file containing the genetic code of the taxa. This will most likely not be needed except for some organisms like ciliates. * _The Gcodes.txt is a tab separated txt file containing the genetic code of the taxa. This will most likely not be needed except for some organisms like ciliates._
*** Example: * Example:
| Taxa | Genetic code | | Taxa | Genetic code |
| ----------- | --------- | | ----------- | --------- |