From 75609183e8ce01aca9dc9d5ffdf35c79e8569e6d Mon Sep 17 00:00:00 2001 From: Godwin Ani Date: Mon, 12 Aug 2024 12:25:43 -0400 Subject: [PATCH] Updated PhyloToL Part 1: GF assignment (markdown) --- PhyloToL-Part-1:-GF-assignment.md | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/PhyloToL-Part-1:-GF-assignment.md b/PhyloToL-Part-1:-GF-assignment.md index de54e6e..85ab19d 100644 --- a/PhyloToL-Part-1:-GF-assignment.md +++ b/PhyloToL-Part-1:-GF-assignment.md @@ -71,11 +71,11 @@ Replacing the PhyloToL Hook DB with a user-defined set of gene families is strai Role of each script -Main inputs : A folder containing the assembled transcripts, a folder containing the Databases, and a folder containing the scripts. -*Optional inputs : Gcodes.txt and Conspecific.txt -Outputs : ReadyToGo files (AA and NTD), taxon summary, and sequence summary. -* The Gcodes.txt is a tab separated txt file containing the genetic code of the taxa. This will most likely not be needed except for some organisms like ciliates. -Example: +* Main inputs : A folder containing the assembled transcripts, a folder containing the Databases, and a folder containing the scripts. +* *Optional inputs : Gcodes.txt and Conspecific.txt +* Outputs : ReadyToGo files (AA and NTD), taxon summary, and sequence summary. +* *The Gcodes.txt is a tab separated txt file containing the genetic code of the taxa. This will most likely not be needed except for some organisms like ciliates. +* Example: | Taxa | Genetic code | | ----------- | --------- |