diff --git a/QuickStart-EukPhylo.md b/QuickStart-EukPhylo.md index fbe1b52..8c10e3c 100644 --- a/QuickStart-EukPhylo.md +++ b/QuickStart-EukPhylo.md @@ -71,12 +71,12 @@ To add the XPC option, only available for transcriptomes, user need to add the - ## Genomes: ### Set Up: * A folder called “CDS” with your CDS fasta files -* A folder called “Databases” with the three folders: -* * db_BvsE (how we ID likely-bacterial sequences) -* * db_StopFreq (for stop codon assignment) -* * db_OG -* * * Hook *.dmnd file ([Current version Hook-6.6.dmnd]) -* * * Hook *.fasta file ([Current version Hook-6.6.fasta]) +* A folder called “Databases” with the three sub folders: + * db_BvsE (how we ID likely-bacterial sequences) + * db_StopFreq (for stop codon assignment) + * db_OG + * Hook *.dmnd file ([Current version Hook-6.6.dmnd]) + * Hook *.fasta file ([Current version Hook-6.6.fasta]) * A folder called “Scripts” filled with the 10 scripts from [here](https://github.com/Katzlab/PhyloToL-6/tree/main/PTL1/Genomes/Scripts) on Github. To run locally, pull out all scripts into main folder ### Running: