From 8554049b2dad41923c6fa6fef2e82eededa74394 Mon Sep 17 00:00:00 2001
From: "Adri K. Grow" <42044618+adriannagrow@users.noreply.github.com>
Date: Tue, 28 Jan 2025 14:48:12 -0500
Subject: [PATCH] Updated QuickStart EukPhylo (markdown)

---
 QuickStart-EukPhylo.md | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/QuickStart-EukPhylo.md b/QuickStart-EukPhylo.md
index 96e7990..0ce4b44 100644
--- a/QuickStart-EukPhylo.md
+++ b/QuickStart-EukPhylo.md
@@ -109,8 +109,8 @@ If a user choose to use their own gene families database, they need to replace t
 # EukPhylo part 2 = MSA - Trees - Contamination Removal - Concatenation
 
 
-## Set Up:
-### Structure:
+## EPp2:
+### Set up:
 * A folder called “Scripts” with scripts from [here](https://github.com/Katzlab/EukPhylo/tree/main/PTL2/Scripts) on Github
  * Inside the Scripts folder, you also need to add the trimal-trimAl and guidance.v2.02 folders, as downloaded from [here](http://trimal.cgenomics.org/downloads) and [here](https://github.com/anzaika/guidance)
 * An empty output folder named as you wish for all output files (which will include trees and guidance files when done running), for example: Output_folder