diff --git a/PhyloToL-Part-1.md b/PhyloToL-Part-1.md
index e48ce0e..bae2992 100644
--- a/PhyloToL-Part-1.md
+++ b/PhyloToL-Part-1.md
@@ -59,9 +59,9 @@ Users can either use the PhyloToL Hook database or a set of gene families of int
 
 ### Swapping out the hook
 Replacing the PhyloToL Hook DB with a user-defined set of gene families is straightforward:
-* You need two files, a fasta file with your target sequences, and this same file reformatted as a diamond database (diamond makedb --in <path to fasta file> -d <name you want to give it>.dmnd)
+* You need two files, a fasta file with your target sequences, and this same file reformatted as a diamond database (`diamond makedb --in <path to fasta file> -d <name of output>.dmnd`)
 * The hook then is put in the db_OG database folder prior to running Part 1
-* Be aware that you must give your fasta file and your diamond file the same exact prefix, or else your run will fail at the end. For example, the Katzlab Hook-6.6 files are named: Hook-6.6.fasta, Hook-6.6.dmnd
+* Be aware that you must give your fasta file and your diamond file the same exact prefix, or else your run will fail at the end. For example, the Katzlab Hook-6.6 files are named: `Hook-6.6.fasta`, `Hook-6.6.dmnd`