From 964bbd2dfc2ebc33a918418d351ddcd0c4ac856f Mon Sep 17 00:00:00 2001
From: "Adri K. Grow" <42044618+adriannagrow@users.noreply.github.com>
Date: Tue, 28 Jan 2025 15:22:00 -0500
Subject: [PATCH] Updated EukPhylo Part 2: MSAs, trees, and contamination loop
 (markdown)

---
 EukPhylo-Part-2:-MSAs,-trees,-and-contamination-loop.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/EukPhylo-Part-2:-MSAs,-trees,-and-contamination-loop.md b/EukPhylo-Part-2:-MSAs,-trees,-and-contamination-loop.md
index 8556a03..d46b269 100644
--- a/EukPhylo-Part-2:-MSAs,-trees,-and-contamination-loop.md
+++ b/EukPhylo-Part-2:-MSAs,-trees,-and-contamination-loop.md
@@ -20,7 +20,7 @@ The following are required to run EukPhylo part 1. The dependencies are confirme
 * [Guidance](https://taux.evolseq.net/guidance/) (version 2.0.2)
     * Note that once you have downloaded Guidance, you will likely have to run the command [chmod u+x](https://www.computerhope.com/unix/uchmod.htm) on the guidance executable script (found within the www folder) as well as all dependency executable scripts (found within the programs folder).
     * Both the Guidance AND TrimAL folders as downloaded from the respective websites (see TrimAL link below) should be placed in the Scripts folder (see more info on folder structure below).
-* [TrimAL](https://vicfero.github.io/trimal/index.html) (version 2.rev0)
+* [trimAl](https://vicfero.github.io/trimal/index.html) (version 2.rev0)
 * [MAFFT](https://mafft.cbrc.jp/alignment/software/) (version 7.49)
 * [IQ-Tree](http://www.iqtree.org/) (version 2.1.2) and/OR [RAxML](https://cme.h-its.org/exelixis/web/software/raxml/) (version 8.2.12) and/OR [FastTree](https://microbesonline.org/fasttree/) (version 2.1)