From a7160508e1d48116b3c8dea6ba553ae6fc24af0d Mon Sep 17 00:00:00 2001 From: Katzlab Date: Sat, 10 Aug 2024 15:45:55 -0400 Subject: [PATCH] Updated Home (markdown) --- Home.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/Home.md b/Home.md index 2acd204..6ed231f 100644 --- a/Home.md +++ b/Home.md @@ -4,7 +4,7 @@ The core PhyloToL pipeline comprises two main components, which we refer to as P We also provide a suite of utility scripts for describing data output by PhyloToL (e.g. basic sequence statistics such as composition, coverage, and length) as well as performing some of PhyloToL's more complex operations (e.g. "clade-grabbing") in a stand-alone form. -## PhyloToL Part 1 +## PhyloToL Part 1 – Gene family assignment * [Overview & modularity](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1#overview-and-modularity) * [Setup](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1#setup) * [The Hook Database](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1#the-hook-database) @@ -12,7 +12,7 @@ We also provide a suite of utility scripts for describing data output by PhyloTo * [Processing transcriptomes](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1#processing-transcriptomes) * [Processing genomes](https://github.com/Katzlab/PhyloToL-6/wiki/Part1phylotol-part-1#processing-genomes) -## PhyloToL Part 2 +## PhyloToL Part 2 – MSAs, gene trees, species trees * [Overview & modularity](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-2#overview-and-modularity) * [Setup](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-2#setup) * [Databases]