diff --git a/PhyloToL-Part-1:-GF-assignment.md b/PhyloToL-Part-1:-GF-assignment.md index 672820b..06f3987 100644 --- a/PhyloToL-Part-1:-GF-assignment.md +++ b/PhyloToL-Part-1:-GF-assignment.md @@ -103,6 +103,6 @@ To process transcriptomes, run: * --genetic_code = specified genetic code, name of .txt file with Genetic codes * -d = path to Databases folder * />log.txt = if added to the end of the command, it will output a log file with progress, warning, or error messages - +* *For running with cross plate contamination removal, add `-x -n Conspecific.txt` to the line of code. ### Processing genomes