diff --git a/TroubleShooting-&-FAQs.md b/TroubleShooting-&-FAQs.md index a360a5b..71c0064 100644 --- a/TroubleShooting-&-FAQs.md +++ b/TroubleShooting-&-FAQs.md @@ -12,11 +12,11 @@ PhyloToL is not a commercial package, and so it is on each researcher to investi * Most items are found in our [figshare folder](https://figshare.com/account/home#/projects/196552) ## How do I set up my names and fasta files? -* Required elements are: -> * unique 10 digit code for each taxon (e.g. Op_me_Hsap for humans, Ba_pg_Ecol for _E. coli_) -> * some unique identifier -> * for Part 2, each sequence name should end with a 10 digit code for each gene family (e.g. OG6_123456) -> * example: >Op_me_Hsap_HP067328_OG6_124578 +Required elements are: +* unique 10 digit code for each taxon (e.g. Op_me_Hsap for humans, Ba_pg_Ecol for _E. coli_) + * some unique identifier + * for Part 2, each sequence name should end with a 10 digit code for each gene family (e.g. OG6_123456) + * example: >Op_me_Hsap_HP067328_OG6_124578 ## What should I look for if I get no output from PTL6p2? * Check your folder structure, input files, and the scripts. Also make sure to delete the output folder from the previous run.