From a960016f7481f3c43be7cd3cbeaa21f4b170b8c3 Mon Sep 17 00:00:00 2001 From: Godwin Ani Date: Wed, 14 Aug 2024 13:45:26 -0400 Subject: [PATCH] Updated TroubleShooting & FAQs (markdown) --- TroubleShooting-&-FAQs.md | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/TroubleShooting-&-FAQs.md b/TroubleShooting-&-FAQs.md index a360a5b..71c0064 100644 --- a/TroubleShooting-&-FAQs.md +++ b/TroubleShooting-&-FAQs.md @@ -12,11 +12,11 @@ PhyloToL is not a commercial package, and so it is on each researcher to investi * Most items are found in our [figshare folder](https://figshare.com/account/home#/projects/196552) ## How do I set up my names and fasta files? -* Required elements are: -> * unique 10 digit code for each taxon (e.g. Op_me_Hsap for humans, Ba_pg_Ecol for _E. coli_) -> * some unique identifier -> * for Part 2, each sequence name should end with a 10 digit code for each gene family (e.g. OG6_123456) -> * example: >Op_me_Hsap_HP067328_OG6_124578 +Required elements are: +* unique 10 digit code for each taxon (e.g. Op_me_Hsap for humans, Ba_pg_Ecol for _E. coli_) + * some unique identifier + * for Part 2, each sequence name should end with a 10 digit code for each gene family (e.g. OG6_123456) + * example: >Op_me_Hsap_HP067328_OG6_124578 ## What should I look for if I get no output from PTL6p2? * Check your folder structure, input files, and the scripts. Also make sure to delete the output folder from the previous run.