From aa72baad3874f4eb0455a984fce0986869ab1572 Mon Sep 17 00:00:00 2001 From: Katzlab Date: Mon, 12 Aug 2024 10:19:48 -0400 Subject: [PATCH] Updated Home (markdown) --- Home.md | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/Home.md b/Home.md index 43cae1e..fcc21ca 100644 --- a/Home.md +++ b/Home.md @@ -14,13 +14,13 @@ We also provide a suite of utility scripts for describing data output by PhyloTo ## PhyloToL Part 2 – MSAs, gene trees, species trees * [Overview and modularity](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-2:-MSAs,-trees,-and-contamination-loop#overview-and-modularity) -* [Setup](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-2#setup) -* [Databases] +* [Setup](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-2:-MSAs,-trees,-and-contamination-loop#setup) +* [Databases](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-2:-MSAs,-trees,-and-contamination-loop#databases) * [Running PhyloToL Part 2] - * [Overlap and similarity filters](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-2#overlap-and-similarity-filters) - * [Guidance](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-2#guidance) - * [Gene trees](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-2#gene-trees) - * [Contamination loop: phylogeny-informed contamination removal](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-2#contamination-loop) + * [Overlap and similarity filters](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-2:-MSAs,-trees,-and-contamination-loop#overlap-and-similarity-filters) + * [Guidance](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-2:-MSAs,-trees,-and-contamination-loop#guidance) + * [Gene trees](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-2:-MSAs,-trees,-and-contamination-loop#gene-trees) + * [Contamination loop: phylogeny-informed contamination removal](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-2:-MSAs,-trees,-and-contamination-loop#contamination-loop) ## Other * [Utility scripts](https://github.com/Katzlab/PhyloToL-6/wiki/Utilities)