diff --git a/PhyloToL-Part-1:-GF-assignment.md b/PhyloToL-Part-1:-GF-assignment.md
index 2e754ee..12a5c79 100644
--- a/PhyloToL-Part-1:-GF-assignment.md
+++ b/PhyloToL-Part-1:-GF-assignment.md
@@ -71,8 +71,8 @@ Replacing the PhyloToL Hook DB with a user-defined set of gene families is strai
 Role of each script
 <img src="https://github.com/Katzlab/PhyloToL-6/blob/main/Other/PTL1_Processing_Transcriptomes_scripts.png" width="100%">
 
-* Main inputs : A folder containing the assembled transcripts, a folder containing the Databases, and a folder containing the scripts.
-* Outputs : ReadyToGo files (AA and NTD), taxon summary, and sequence summary.
+* **Main inputs** : A folder containing the assembled transcripts, a folder containing the Databases, and a folder containing the scripts.
+* **Outputs** : ReadyToGo files (AA and NTD), taxon summary, and sequence summary.
 * *Optional inputs : Gcodes.txt and Conspecific.txt
 * *The Gcodes.txt is a tab separated txt file containing the genetic code of the taxa. This will most likely not be needed except for some organisms like ciliates.
 * _Example:_
@@ -93,4 +93,9 @@ Role of each script
 | EE_uc_Me04  | Metatranscriptome | 
 | EE_uc_Me05  | Metatranscriptome | 
 
+To process transcriptomes, run:
+
+'python wrapper.py -1 1 -2 7 --assembled_transcripts AssembledTranscripts -o . --genetic_code Universal -d Databases > log.txt'
+
+
 ### Processing genomes